PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 499aa    MW: 54497 Da    PI: 7.3285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929993.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10104126426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++ ++GtC++G++CkF+H+
  XP_010929993.1 104 PDCTYYVKNGTCRFGSSCKFNHP 126
                     68********************8 PP

2zf-CCCH22.61.8e-07220242527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C++++  G Ck+G  Ck+ H p
  XP_010929993.1 220 ECKYYSMPGGCKFGKACKYVHHP 242
                     6********************75 PP

3zf-CCCH31.82.4e-10261286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++rtG Ck+  +Ck++H+
  XP_010929993.1 261 PGERECPYYMRTGSCKFATNCKYHHP 286
                     5789*********************9 PP

4zf-CCCH24.93.5e-08403429127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++ G Ck+   CkF+H++
  XP_010929993.1 403 PGQPECQYFMKHGVCKFKTACKFHHPK 429
                     5789*********************96 PP

5zf-CCCH35.41.8e-11450474226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C ++ r+G CkyG++CkF H+
  XP_010929993.1 450 DQPVCTHYNRFGVCKYGPSCKFDHP 474
                     6899********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.643100128IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8104126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54215243IPR000571Zinc finger, CCCH-type
SMARTSM003560.067215242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5219245IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5220241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4221242IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596260288IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7262286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5263287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704402430IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013402429IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5404429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5406430IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4448475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403448476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5449475IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8450474IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4453473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAVSEAEVVP KTEELGLGLA TAASSPSSPS DSFVEALTGE FASLKLEKKS AEEAGDQDNT  60
GAGDQEEITG DENGGVVEKD SGSPGKEKEG KEERFRYPQR LDAPDCTYYV KNGTCRFGSS  120
CKFNHPARRK RNKVKSKKPF EANQAVKEEQ KEPIPKVGQT ESKVDKKEEK ASSDMVGQME  180
CEAVDEMQNG TLSERGEEKD SKATEEKGKE TLSERAGQME CKYYSMPGGC KFGKACKYVH  240
HPGKLENNSV QLNFLGLPIR PGERECPYYM RTGSCKFATN CKYHHPDPTA VGGQDPRSGH  300
RNSEPPQHGL GAPQVPMTWP VQRMSNEPIS FLNASPSYVP GMILPPQGFH SNPEWNGYQA  360
PVSPLFPPDI HARNSASTIN HKTNKGDIPV SQQVPVDEYP ERPGQPECQY FMKHGVCKFK  420
TACKFHHPKT RPQTVPVGVL SPVGLPLKPD QPVCTHYNRF GVCKYGPSCK FDHPIGHGSS  480
ASAGVVVSGQ IATPNNATT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127137RRKRNKVKSKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929993.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.21e-73C3H family protein